不同碳氮有机物料对有机菜田土壤细菌多样性的影响
杨昊, 张瑞, 叶俊, 蔡保松, 黄丹枫

Effect of Bacterial Community Structure Diversity with Different Carbon and Nitrogen Organic Materials Treatments in Organic Vegetable Soil
Hao YANG, Gonzalez Perez Pablo, Rui ZHANG, Jun YE, Bao-song CAI, Dan-feng HUANG
表3 细菌DGGE图谱条带的序列比对结果
Tab.3 Sequence alignment of bands in bacterial DGGE profile
条带
Band
登录号
Genebank
Accession No.
序列长度
Sequence
lehgth(bp)
系统分类
Phylogenetic
affiliation
相似菌株
Closest Identified Relative
(Genebank Accession No.)
同源性
Homology(%)
B1 KM281157 435 Firmicutes; Clostridiaceae; Clostridium. Uncultured Clostridium sp.clone T3-69 16S ribosomal RNA gene, partial sequence(KM200463) 99%
B2 KM281158 434 Acidobacteria; Acidobacteriales. Uncultured Acidobacteriales bacterium clone E2006TS6.44 16S ribosomal RNA gene, partial sequence(GU983317) 99%
B5 KM281161 434 Acidobacteria; Uncultured Acidobacteria bacterium clone AKYG1109 16S ribosomal RNA gene, partial sequence(AY921847) 99%
B7 KM281163 438 Uncultured bacterium(HQ119238) 99%
B8 KM281164 434 Acidobacteria; Uncultured Acidobacteria bacterium clone HG-B02190 16S ribosomal RNA gene, partial sequence(JN409248) 99%
B9 KM281165 434 Uncultured bacterium clone WIF2 16S ribosomal RNA gene, partial Sequence(HQ166676) 100%
B10 KM281166 437 Uncultured bacterium(JF708475) 92%
B11 KM281167 435 Uncultured bacterium clone CP63 16S ribosomal RNA gene, partial sequence(JX133269) 100%
B12 KM281168 437 Uncultured bacterium(JF708475) 100%
B13 KM281169 436 Firmicutes; Bacillaceae; Bacillus. Uncultured Bacillus sp.clone SGR274 16S ribosomal RNA gene, partial sequence(JQ793581) 94%
B14 KM281170 434 Proteobacteria; Rhodocyclales; Rhodocyclaceae. Uncultured Rhodocyclaceae bacterium partial 16S rRNA gene, clone SBROB5_44(LN555043) 98%
B15 KM281171 436 Proteobacteria; Alphaproteobacteria; Uncultured alpha proteobacterium(JN038900) 99%
B16 KM281172 435 Uncultured bacterium clone MCzcultivatedPlana46 16S ribosomal RNA gene, partial sequence(HM444534) 99%
B18 KM281174 438 Acidobacteria; Uncultured Acidobacteria(JN409214) 93%
B19 KM281175 439 Actinobacteria; Intrasporangiaceae; Humibacillus. Humibacillus xanthopallidus gene for 16S rRNA, partial sequence, strain:S32487(AB648995) 99%
B21 KM281177 431 Uncultured bacterium isolate DGGE gel band CB-9 16S ribosomal RNA gene, partial sequence(KJ667548) 99%
B24 KM281180 433 Actinobacteria; Micromonosporaceae; Planosporangium. Planosporangium thailandense strain HSS8-18 16S ribosomal RNA gene, partial sequence(NR_108119) 98%
B26 KM281181 436 Proteobacteria; Xanthomonadales; Sinobacteraceae. Uncultured Sinobacteraceae bacterium partial 16S rRNA gene, clone SBROB5_36(LN555035) 94%
B28 KM281183 435 Proteobacteria; Pseudomonadaceae; Pseudomonas. Pseudomonas sp.CC-MHH0089 16S ribosomal RNA gene, partial sequence(KJ720680) 99%
B29 KM281184 431 Uncultured bacterium clone BacC-s_023 16S ribosomal RNA gene, partial sequence(EU335200) 98%
B30 KM281185 434 Uncultured bacterium partial 16S rRNAgene, clone SICT499_N9D2_16S_B(LN570594) 99%
B31 KM281186 435 Uncultured bacterium(DQ973988) 97%
B32 KM281187 434 Uncultured bacterium(GU320659) 91%
B34 KM281188 433 Actinobacteria; Nocardioidaceae; Marmoricola. Marmoricola sp.M57 16S ribosomal RNA gene, partial sequence(KC464831) 99%
B35 KM281189 435 Acidobacteria; Uncultured Acidobacteria(JN408907) 99%
B39 KM281192 433 Actinobacteria; Propionibacterineae; Nocardioidaceae; Marmoricola. Uncultured Marmoricola sp.clone BG1-39 16S ribosomal RNA gene, partial sequence(JX079124) 97%
B42 KM281194 434 Verrucomicrobia; Verrucomicrobiales; Verrucomicrobiaceae. Uncultured Verrucomicrobiaceae(FJ542838) 98%
B43 KM281195 434 Uncultured bacterium(JX133426) 100%
B44 KM281196 422 Uncultured bacterium(DQ499290) 95%
B46 KM281198 437 Uncultured bacterium isolate DGGE gel band CB-16 16S ribosomal RNA gene, partial sequence(KJ667555) 94%